Mass Spec and Proteomics 2018 (MSP 2018) satellite

International Proteogenome Workshop in Kyoto

- Connecting Bioinformatics Resources and the Cancer Moonshot Projects -

Last update 2018.5.19

International Proteogenome Workshop 2018

Organized by
Co-organized by
Kyoto University (SPIRITS), the jPOST project (supported by JST-NBDC), EMBL-EBI, JPrOS
Yasushi Ishihama (Kyoto Univ.) and Juan Antonio Vizcaino (EMBL-EBI)
May 19 (Sat), 2018
Fujita Memorial Hall, Med-Pharm Collaboration Bldg (No.68), Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan (Google Map)
Main Topic
Connecting bioinformatics resources and the Cancer Moonshot Project
(PDF, 23MB)


9:30 Registration open
9:50-10:00 Opening
  • Yasushi Ishihama (Kyoto Univ., Japan)

Current status of Cancer Proteogenomics in Asia Oceania regions (including the plans for the Cancer Moonshot program): focusing on bioinformatics infrastructure and data analysis

In this session, speakers would introduce the current status of their region’s proteogenomics project especially focusing on the needs of bioinformatics infrastructure and data analysis capabilities.

Scheduled presenters:
  • Yu-Ju Chen (Academia Sinica, Taiwan)
  • Jau-Song Yu (Chang Gung Univ., Taiwan)
  • Jun Qin (BPRC, China)
  • Min-Sik Kim (Kyung Hee Univ., Korea)
  • Tadashi Kondo (NCC, Japan)
12:30-14:00 Lunch

Current status of bioinformatics for proteogenomics

In this session, topics would be focused on bioinformatics tools, resources and infrastructure for cancer proteogenomics such as FDR control, data integration and pathway analysis.

Scheduled presenters:
  • Juan Antonio Vizcaino and Andrew Jarnuczak (EBI): PRIDE
  • Henning Hermjakob (EBI, BPRC): Reactome
  • Jyoti Choudhary (Institute of Cancer Research, London) [Online lecture]: Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells
  • Yasushi Ishihama (Kyoto Univ.): jPOST
16:00-17:00 Discussion (all participants)
18:00- Dinner (invited attendees)


Registration fee: free

Registration closed.


Yasushi Ishihama, Graduate School of Pharamaceutical Sciences, Kyoto University
Tel: +81-75-753-4555